Package: blimps-examples Description-md5: 18ddc9ff8aab78bc1efd53cccc24389d Description-en: blocks database improved searcher (example data) BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package contains example data. Package: blimps-utils Description-md5: 1afe4567b883b39e7050a4f604a91e17 Description-en: blocks database improved searcher BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package contains the binaries. Package: brain2mesh-demos Description-md5: e9f024807779a12817de357606f053ea Description-en: sample files and demo scripts for Brain2Mesh This package contains sample JNIfTI sample data and meshing script to demonstrate the basic functionalities of the Brain2Mesh Toolbox. Package: cuda-drivers-fabricmanager-580 Description-md5: 6715a1a6e39ab2cdf04d9fe216556c20 Description-en: Meta-package for FM and Driver Convenience meta-package for installing fabricmanager and the cuda-drivers meta-package simultaneously while keeping version equivalence. This meta- package is branch-specific. Package: firmware-qcom-dragonboard845c Description-md5: 3507088ed94312d44b4d5f5207d7374f Description-en: Binary firmware for various Qualcomm drivers used on Dragonboard 845c This package contains the binary firmware for GPU, USB, Venus, DSP hardware coprocessors found on SDM845, which is the main SoC on the Dragonboard 845c. Package: firmware-qcom-rb3gen2 Description-md5: 932dde057b2dbbe5130433652321aa51 Description-en: Binary firmware for Qualcomm Robotics RB3 Gen2 This package contains the binary firmware for the QCS6490, which is the main SoC on the Robotics RB3 Gen2. Package: firmware-qcom-rb5 Description-md5: 0abf8cbedf59bff7af0b4696550319c7 Description-en: Binary firmware for various Qualcomm drivers used on Robotics RB5 This package contains the binary firmware for the SM8250, which is the main SoC on the Robotics RB5. Package: fonts-moe-standard-kai Description-md5: 088d6267378a16a8f81ea0b96147b246 Description-en: Chinese TrueType font, standard Kaiti (non-free) MOE Std Kai is released by Taiwan Ministry of Education. It covers the characters plane 1 and 2 defined by CNS11643. Package: fonts-moe-standard-song Description-md5: 14d2f6f8b7f15ea351b3521ad4b5f8fd Description-en: Chinese TrueType font, standard Song (non-free) MOE Std Song is released by Taiwan Ministry of Education. It covers the characters plane 1 to 7 defined by CNS11643. Package: gitaly-installer Description-md5: a0db51942a7c98ec821bffaf2b5a8789 Description-en: Git RPC service for handling all the git calls made by GitLab Gitaly makes the git data storage tier of large GitLab instances fast. This is achieved by moving git operations as close to the data as possible and Optimizing git services using caching. Gitaly is a core service of gitlab. This package installs Gitaly from pre-built binaries from Gitlab artifacts. Package: gitlab-common Description-md5: ccb3bd8dfffd14a6e75d53315368861a Description-en: git powered software platform to collaborate on code (common) gitlab provides web based interface to host source code and track issues. It allows anyone for fork a repository and send merge requests. Code review is possible using merge request workflow. Using groups and roles project access can be controlled. . This package includes configurations common to gitlab and gitaly. Package: jnifti-demos Description-md5: 7445791185a3b5db029339474eb2fce6 Description-en: sample files and demo scripts for JNIfTI toolbox This package contains sample NIfTI-1/2 data files as well as text and binary JNIfTI files. Package: lgeneral Description-md5: d3cd338c86e0144cd187ecea33e57ef8 Description-en: strategy game in the tradition of Panzer General LGeneral is a turn-based strategy game heavily inspired by Panzer General. You play single scenarios or whole campaigns turn by turn against a human player or the AI. . Entrenchment, rugged defense, defensive fire, surprise contacts, surrender, unit supply, weather influence, reinforcements and other implementations contribute to the tactical and strategic depth of the game. . This is the game engine only. LGeneral requires lgeneral-data or lgc-pg, which converts the game data of the original Panzer General game, to function properly. Package: libamgcl-dev Description-md5: ec65c5ece2e2ac48e9fba2a354789071 Description-en: Solves large sparse linear systems with algebraic multigrid method AMG is one of the most effective iterative methods for solution of equation systems arising, for example, from discretizing PDEs on unstructured grids. The method can be used as a black-box solver for various computational problems, since it does not require any information about the underlying geometry. AMG is often used not as a standalone solver but as a preconditioner within an iterative solver (e.g. Conjugate Gradients, BiCGStab, or GMRES). . AMGCL builds the AMG hierarchy on a CPU and then transfers it to one of the provided backends. This allows for transparent acceleration of the solution phase with help of OpenCL, CUDA, or OpenMP technologies. Users may provide their own backends which enables tight integration between AMGCL and the user code. . AMG is a header-only C++ library, with the headers provided by this package. Package: libblimps3 Description-md5: a1ad50ab461eca726e0a4e957f1a2ffa Description-en: blocks database improved searcher library BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package provides the shared library. Package: libblimps3-dev Description-md5: 4d04b155f279229d68533b0ec59a8e4f Description-en: blocks database improved searcher library (development) BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package provides the library development headers and the static library. Package: libcudnn-frontend-dev Description-md5: 6272d149e1d6d63a6a1faa440ced237d Description-en: c++ wrapper for the cudnn backend API (development files) The cuDNN frontend API is a C++ header-only library that wraps the cuDNN C backend API. Both the frontend and backend APIs are entry points to the same set of functionality that we commonly refer to as the "graph API". . While there are two entry points to the graph API (i.e. backend and frontend), we expect that most users will use the frontend entry point because: . It is less verbose without loss of control. All functionality accessible through the backend API is also accessible through the frontend API. It adds functionality on top of the backend API, like errata filters and autotuning. Also, for those who want to use the backend API, the frontend source can serve as a reference implementation. . This is a header-only C++ library. Package: libcutlass-dev Description-md5: 4d44009005870b8473610afb57050108 Description-en: CUDA Templates for Linear Algebra Subroutines CUTLASS is a collection of CUDA C++ template abstractions for implementing high-performance matrix-matrix multiplication (GEMM) and related computations at all levels and scales within CUDA. It incorporates strategies for hierarchical decomposition and data movement similar to those used to implement cuBLAS and cuDNN. CUTLASS decomposes these "moving parts" into reusable, modular software components abstracted by C++ template classes. Primitives for different levels of a conceptual parallelization hierarchy can be specialized and tuned via custom tiling sizes, data types, and other algorithmic policy. The resulting flexibility simplifies their use as building blocks within custom kernels and applications. . To support a wide variety of applications, CUTLASS provides extensive support for mixed-precision computations, providing specialized data-movement and multiply-accumulate abstractions for half-precision floating point (FP16), BFloat16 (BF16), Tensor Float 32 (TF32), single-precision floating point (FP32), FP32 emulation via tensor core instruction, double-precision floating point (FP64) types, integer data types (4b and 8b), and binary data types (1b). CUTLASS demonstrates warp-synchronous matrix multiply operations targeting the programmable, high-throughput Tensor Cores implemented by NVIDIA's Volta, Turing, Ampere, and Hopper architectures. . This is a header-only library. Package: libgloo-cuda-0 Description-md5: 11fe5b4bb9197845522ecac87176ae15 Description-en: Collective communications library (shared object) Gloo is a collective communications library. It comes with a number of collective algorithms useful for machine learning applications. These include a barrier, broadcast, and allreduce. . Transport of data between participating machines is abstracted so that IP can be used at all times, or InifiniBand (or RoCE) when available. In the latter case, if the InfiniBand transport is used, GPUDirect can be used to accelerate cross machine GPU-to-GPU memory transfers. . Where applicable, algorithms have an implementation that works with system memory buffers, and one that works with NVIDIA GPU memory buffers. In the latter case, it is not necessary to copy memory between host and device; this is taken care of by the algorithm implementations. . This package ships the shared object for Gloo. Package: libgloo-cuda-dev Description-md5: 1eb5d67397fdb9a8162c5c082d1e6d78 Description-en: Collective communications library (development files) Gloo is a collective communications library. It comes with a number of collective algorithms useful for machine learning applications. These include a barrier, broadcast, and allreduce. . Transport of data between participating machines is abstracted so that IP can be used at all times, or InifiniBand (or RoCE) when available. In the latter case, if the InfiniBand transport is used, GPUDirect can be used to accelerate cross machine GPU-to-GPU memory transfers. . Where applicable, algorithms have an implementation that works with system memory buffers, and one that works with NVIDIA GPU memory buffers. In the latter case, it is not necessary to copy memory between host and device; this is taken care of by the algorithm implementations. . This package ships the development files. Package: libnvidia-nscq-580 Description-md5: 06d90fb68ae67655c00815a4db03a64e Description-en: NVSwitch Configuration and Query library NVIDIA NVSwitch Configuration and Query (NSCQ) library provides a stable driver API used by DCGM for monitoring NVSwitch devices. Package: libparmetis-dev Description-md5: 839c770f477cb92f6af09275d807c484 Description-en: Parallel Graph Partitioning and Sparse Matrix Ordering Libs: Devel ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and orders variables for minimal fill when using direct solvers for sparse matrices. It does all this in parallel, and also can efficiently re-partition a graph or mesh whose connectivity has changed. . This package contains files needed to develop programs using ParMetis. Package: libparmetis4.0 Description-md5: 17a6686f47a3b63f4328881bffab697b Description-en: Parallel Graph Partitioning and Sparse Matrix Ordering Shared Libs ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and orders variables for minimal fill when using direct solvers for sparse matrices. It does all this in parallel, and also can efficiently re-partition a graph or mesh whose connectivity has changed. . This package contains the ParMetis shared libraries. Package: librna-perl Description-md5: 895cf06070e423e768fdaf45508091e5 Description-en: ViennaRNA perl wrappers Perl wrappers above ViennaRNA library. . The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures Package: matlab-brain2mesh Description-md5: 82b8489a4a2c45cf9c48276e4b0ddc1e Description-en: automated brain tetrahedral mesh generation toolbox for MATLAB Brain2Mesh is a fully automated 3D multi-layered brain mesh generator that supports both MATLAB and Octave. This package provides the toolbox for MATLAB. It requires the Image Processing Toolbox of MATLAB. Package: matlab-jnifti Description-md5: 24850eb9e0467dbd688e49089a9e2803 Description-en: fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter for MATLAB The JNIfTI toolbox includes a stand-alone NIfTI-1/2 parser that works on both MATLAB and GNU Octave without needing additional components. To just reading and writing the un-compressed NIfTI and Analyze7.5 files (.nii, .hdr/.img), one only needs to run addpath('/path/to/jnifti'). For MATLAB, JNIfTI toolbox utilizes memmapfile-based disk-reading, making it very fast. For Octave, memmapfile is currently not implemented, so, a full reading is required. . The JNIfTI toolbox is also capable of reading/writing gzip-compressed NIfTI and Analyze7.5 files (.nii.gz, .hdr.gz, .img.gz). This feature is supported in MATLAB directly without needing another toolbox (MATLAB must be in the JVM-enabled mode). . To process gzip-compressed NIfTI/Analyze files in Octave and MATLAB with -nojvm, one need to install the open-source JSONLab and ZMat toolboxes Package: mp3fs Description-md5: 8f548d5affaa2e87ffd6a47cb0cd77db Description-en: FUSE filesystem for transcoding FLAC to MP3 on the fly MP3FS is a read-only FUSE filesystem which transcodes audio formats (currently FLAC) to MP3 on the fly when opened and read. . It is also a novel alternative to traditional mp3 encoder applications. Users can use their favorite file browser to select the files they want encoded and copy them somewhere. Package: mythexport Description-md5: 12ab5e38316c18c95bfaa83c81fdc635 Description-en: Export MythTV recording to portable media players MythExport is a Perl daemon that can be used with MythTV to export recordings into a format playable on portable devices such as iPod Video, iPod Touch, PSP, and other devices. Besides converting your recordings, this script also grabs data from the MythTV MySQL database and injects it as iTunes data into the exported video so that it will show up correctly on your iPod. MythExport may also be used to take your recordings "On The Go" and provides a RSS feed to all exported recordings. Package: mythimport Description-md5: a5ce0608224d87f6b22b449262569939 Description-en: Import On The Go recordings from MythExport MythImport is a script that can be used to import recordings into an On The Go backend. Package: nvidia-cudnn Description-md5: aff2caf53c29838279b63dd35dec1798 Description-en: NVIDIA CUDA Deep Neural Network library (install script) The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks. cuDNN provides highly tuned implementations for standard routines such as forward and backward convolution, pooling, normalization, and activation layers. cuDNN is part of the NVIDIA Deep Learning SDK. . This package only contains the script "/usr/sbin/update-nvidia-cudnn" to download and install Nvidia cuDNN locally. It will be automatically invoked during installation. Package: nvidia-fabricmanager-580 Description-md5: 3d49e1346de8fc10beaca066b0eb5df0 Description-en: Fabric Manager for NVSwitch based systems. Fabric Manager for NVIDIA NVSwitch based systems. Package: nvidia-fabricmanager-dev-580 Description-md5: 565605cc6a127d423c88c38e5c2f9a26 Description-en: Fabric Manager API headers and associated library Fabric Manager API headers and associated library Package: nvidia-imex-580 Description-md5: f7a765b2a95d4cabcc9695466d5f6cc8 Description-en: IMEX Manager for NVIDIA based systems. IMEX Manager for NVIDIA systems. Package: octave-brain2mesh Description-md5: 63af1c41e2154d307ea77a403e3ba7f9 Description-en: automated brain tetrahedral mesh generation toolbox for Octave The Brain2Mesh toolbox provides a streamlined matlab function to convert a segmented brain volumes and surfaces into a high-quality multi-layered tetrahedral brain/full head mesh. Typical inputs include segmentation outputs from SPM, FreeSurfer, FSL etc. This tool does not handle the segmentation of MRI scans, but examples of how commonly encountered segmented datasets can be used to create meshes can be found in the package named brain2mesh-demos. Package: octave-jnifti Description-md5: af5a7cdee58d2facd39837138556d1d6 Description-en: fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter This is a fully functional NIfTI-1/2 reader/writer that supports both MATLAB and GNU Octave, and is capable of reading/writing both non-compressed and compressed NIfTI files (.nii, .nii.gz) as well as two-part Analyze7.5/NIfTI files. . More importantly, this is a toolbox that converts NIfTI data to its JSON-based replacement, JNIfTI (.jnii for text-based and .bnii for binary-based), defined by the JNIfTI specification http://github.com/fangq/jnifti. JNIfTI is a much more flexible, human-readable and extensible file format compared to the more rigid and opaque NIfTI format, making the data much easier to manipulate and share. Package: odr-audioenc Description-md5: 43f4f6a3da8b5d45734d775a019491b6 Description-en: DAB and DAB+ encoder that integrates into the ODR-mmbTools odr-audioenc is an encoder, which can read audio from a file (raw or wav), from an ALSA source, from JACK or using libVLC or GStreamer, and encode to a file, a pipe, to an EDI or ZeroMQ output compatible with ODR-DabMux. . The libVLC input allows the encoder to use all inputs supported by VLC, and therefore also webstreams and other network sources. The GStreamer input is an alternative to read from various sources. . odr-audioenc can insert Programme-Associated Data, that can be generated with ODR-PadEnc. ODR-AudioEnc v3 is compatible with ODR-PadEnc v3. Package: openjazz Description-md5: e369da5396fe53397886f836fccdd70b Description-en: Jazz Jackrabbit™ game engine reimplementation OpenJazz is a free, open-source version of the classic Jazz Jackrabbit™ games. . Jazz Jackrabbit™ is a PC platform game. Produced by Epic Games (then Epic MegaGames), it was first released in 1994. The fast-paced, colourful gameplay proved popular, and the game won PC Format's Arcade Game of the Year award. Many people still fondly recall the shareware versions. . With the demise of DOS-based operating systems, it has become necessary to use emulators to play old DOS games. Jazz Jackrabbit™ deserves more - and would benefit greatly from new features. . To play, you will need the files from one of the original games. Current releases of `game-data-packager' are able to generate a suitable data package from the Jazz Jackrabbit Collection as published on GOG. Package: opentyrian Description-md5: 4b23246f88846c4ec73316018d1af88e Description-en: open-source port of the DOS shoot-em-up Tyrian Tyrian is an arcade-style vertical scrolling shooter. The story is set in 20,031 where you play as Trent Hawkins, a skilled fighter-pilot employed to fight Microsol and save the galaxy. . This package needs game data from the original Tyrian game, which is available as a freeware. It can be installed using game-data-packager. Package: parmetis-doc Description-md5: 55cc39b179c0b5b2dedead6fc6a8c34f Description-en: Parallel Graph Partitioning and Sparse Matrix Ordering Lib - Docs ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and orders variables for minimal fill when using direct solvers for sparse matrices. It does all this in parallel, and also can efficiently re-partition a graph or mesh whose connectivity has changed. . This package contains the documentation and example files. Package: parmetis-test Description-md5: b9b53f52a3b7e53d03b5260911e600a9 Description-en: Parallel Graph Partitioning and Sparse Matrix Ordering Tests ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and orders variables for minimal fill when using direct solvers for sparse matrices. It does all this in parallel, and also can efficiently re-partition a graph or mesh whose connectivity has changed. . This package contains programs which test the ParMetis libraries using files in the parmetis-doc package's examples directory. Package: python3-amgcl Description-md5: ecbb9c7c4315244c6b65581f6b220a1f Description-en: Solves large sparse linear systems with algebraic multigrid method AMG is one of the most effective iterative methods for solution of equation systems arising, for example, from discretizing PDEs on unstructured grids. The method can be used as a black-box solver for various computational problems, since it does not require any information about the underlying geometry. AMG is often used not as a standalone solver but as a preconditioner within an iterative solver (e.g. Conjugate Gradients, BiCGStab, or GMRES). . AMGCL builds the AMG hierarchy on a CPU and then transfers it to one of the provided backends. This allows for transparent acceleration of the solution phase with help of OpenCL, CUDA, or OpenMP technologies. Users may provide their own backends which enables tight integration between AMGCL and the user code. . This package provides the Python interface Package: python3-okasha Description-md5: ed6edbf3deb3983057d29b8c36a36a70 Description-en: trivial WSGI web framework for Python Almost do-nothing web framework that features: * WSGI-enabled ie. can be used with mod_wsgi, mod_python, Fast CGI, CGI, with paste or even without even a server * light weight * can be tuned to be suitable for desktop apps or public web servers * no extra dependencies * very simple * Contains a module to add support for XSLT-based templates (requires python-lxml package) * Contains a module to add support for Kid-based templates (requires python-kid package) * Contains a module to add support for Bottle-based templates Package: python3-okasha-examples Description-md5: 5b25d92da2de19f5812b5a45b992d1e8 Description-en: trivial WSGI web framework for Python (examples) Almost do-nothing web framework that features: * WSGI-enabled ie. can be used with mod_wsgi, mod_python, fast cgi, cgi, with paste or even without even a server * light weight * can be tuned to be suitable for desktop apps or public web servers * no extra dependencies * very simple . This package contains an example application using Okasha web framework. Package: python3-pyvkfft-cuda Description-md5: 57ea98ebe636a6b0393437bac86d8b5e Description-en: Binding to the CUDA backends of VkFFT - Python3 pyvkfft offers a simple python interface to the CUDA and OpenCL backends of VkFFT, compatible with pyCUDA, CuPy and pyOpenCL. . This package installs the CUDA backend. Package: python3-rna Description-md5: 310e3dd7fe72676202a1db1d473b4678 Description-en: ViennaRNA Python wrappers Python wrappers above ViennaRNA library. . The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures Package: sabnzbdplus Description-md5: 9af99c00c3efdc0801f9fda555ddbd78 Description-en: web-based binary newsreader with nzb support SABnzbd+ is a web-based binary newsgrabber written in Python, with support for the popular nzb file format. It greatly simplifies the process of downloading from Usenet, thanks to a friendly web-based, fully customizable user interface and advanced built-in post-processing options including the ability to automatically verify, repair, extract and clean up downloaded posts. . Multiple servers are supported, as well as secure (ssl) connections, ipv6, scheduling, pausing and resuming downloads, queue manipulation, rss feeds, automatic sorting, a download history, email notifications, and custom post-processing scripts. An extensive API allows third party applications to interact with the program. . This package contains the program itself and all interface templates. Package: sift Description-md5: 7788bf12148938f8dc8e4675657ce605 Description-en: predicts if a substitution in a protein has a phenotypic effect SIFT is a sequence homology-based tool that sorts intolerant from tolerant amino acid substitutions and predicts whether an amino acid substitution in a protein will have a phenotypic effect. SIFT is based on the premise that protein evolution is correlated with protein function. Positions important for function should be conserved in an alignment of the protein family, whereas unimportant positions should appear diverse in an alignment. Package: vienna-rna Description-md5: cd4926e923e0b58439a80df654cba8f9 Description-en: RNA sequence analysis The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures. It is developed and maintained by the group of Ivo Hofacker in Vienna. . RNA secondary structure prediction through energy minimization is the most used function in the package. It provides three kinds of dynamic programming algorithms for structure prediction: * the minimum free energy algorithm of (Zuker & Stiegler 1981) which yields a single optimal structure, * the partition function algorithm of (McCaskill 1990) which calculates base pair probabilities in the thermodynamic ensemble, and the suboptimal folding algorithm of (Wuchty et.al 1999) which generates all suboptimal structures within a given energy range of the optimal energy. . For secondary structure comparison, the package contains several measures of distance (dissimilarities) using either string alignment or tree-editing (Shapiro & Zhang 1990). Finally, is provided an algorithm to design sequences with a predefined structure (inverse folding). The RNAforester package is a tool for aligning RNA secondary structures and it's user interface integrates to those of the tools of the Vienna RNA package.